Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor Class Reference

Inheritance diagram for Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor:

Public Member Functions
public	get_available_adaptors ()
public Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor	new_public ()

Detailed Description

Description

Specialised DBAdaptor for connecting to the ncbi_taxonomy MySQL database

Synopsis

#create an adaptor (Registry cannot be used currently)
my $tax_dba =  Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor->new(
                                      -user   => $tax_user,
                                      -pass   => $tax_pass,
                                      -dbname => $tax_db,
                                      -host   => $tax_host,
                                      -port   => $tax_port);    
my $node_adaptor = $tax_dba->get_TaxonomyNodeAdaptor();
                                      
=head DESCRIPTION

A specialised DBAdaptor allowing connection to an ncbi_taxonomy database. 
Can be used to retrieve an instance of Bio::EnsEMBL::DBSQL::TaxonomyAdaptor.

Member Function Documentation

public Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor::get_available_adaptors

(

)

Undocumented method

Code:

public Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor::new_public

(

)

    Description : Build a new adaptor from the public database
    Returns     : Bio::EnsEMBL::DBSQL::TaxonomyDBAdaptor
 

Code:

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The documentation for this class was generated from the following file:

• modules/Bio/EnsEMBL/DBSQL/TaxonomyDBAdaptor.pm